From e6c7a4e1e2e3b0437b5dbbbeb7abc4e05622db16 Mon Sep 17 00:00:00 2001
From: Jacky Zhao <j.zhao2k19@gmail.com>
Date: Mon, 12 Sep 2022 01:03:55 +0000
Subject: [PATCH] fix: latex rendering bugs + patch for #195

---
 assets/js/graph.js |  313 +++++++++++++++++++++++++---------------------------
 1 files changed, 151 insertions(+), 162 deletions(-)

diff --git a/assets/js/graph.js b/assets/js/graph.js
index 99ecf54..c89877b 100644
--- a/assets/js/graph.js
+++ b/assets/js/graph.js
@@ -1,251 +1,240 @@
-async function drawGraph(
-  url,
-  baseUrl,
-  pathColors,
+async function drawGraph(baseUrl, isHome, pathColors, graphConfig) {
+
+  let {
   depth,
   enableDrag,
   enableLegend,
-  enableZoom
-) {
-  const container = document.getElementById('graph-container');
+  enableZoom,
+  opacityScale,
+  scale,
+  repelForce,
+  fontSize} = graphConfig;
 
-  const { index, links, content } = await fetchData;
-  const curPage = url.replace(baseUrl, '');
+  const container = document.getElementById("graph-container")
+  const { index, links, content } = await fetchData
+
+  // Use .pathname to remove hashes / searchParams / text fragments
+  const cleanUrl = window.location.origin + window.location.pathname
+
+  const curPage = cleanUrl.replace(/\/$/g, "").replace(baseUrl, "")
 
   const parseIdsFromLinks = (links) => [
     ...new Set(links.flatMap((link) => [link.source, link.target])),
-  ];
+  ]
 
   // Links is mutated by d3. We want to use links later on, so we make a copy and pass that one to d3
   // Note: shallow cloning does not work because it copies over references from the original array
-  const copyLinks = JSON.parse(JSON.stringify(links));
+  const copyLinks = JSON.parse(JSON.stringify(links))
 
-  const neighbours = new Set();
-  const wl = [curPage || '/', '__SENTINEL'];
+  const neighbours = new Set()
+  const wl = [curPage || "/", "__SENTINEL"]
   if (depth >= 0) {
     while (depth >= 0 && wl.length > 0) {
       // compute neighbours
-      const cur = wl.shift();
-      if (cur === '__SENTINEL') {
-        depth--;
-        wl.push('__SENTINEL');
+      const cur = wl.shift()
+      if (cur === "__SENTINEL") {
+        depth--
+        wl.push("__SENTINEL")
       } else {
-        neighbours.add(cur);
-        const outgoing = index.links[cur] || [];
-        const incoming = index.backlinks[cur] || [];
-        wl.push(
-          ...outgoing.map((l) => l.target),
-          ...incoming.map((l) => l.source)
-        );
+        neighbours.add(cur)
+        const outgoing = index.links[cur] || []
+        const incoming = index.backlinks[cur] || []
+        wl.push(...outgoing.map((l) => l.target), ...incoming.map((l) => l.source))
       }
     }
   } else {
-    parseIdsFromLinks(copyLinks).forEach((id) => neighbours.add(id));
+    parseIdsFromLinks(copyLinks).forEach((id) => neighbours.add(id))
   }
 
   const data = {
     nodes: [...neighbours].map((id) => ({ id })),
-    links: copyLinks.filter(
-      (l) => neighbours.has(l.source) && neighbours.has(l.target)
-    ),
-  };
+    links: copyLinks.filter((l) => neighbours.has(l.source) && neighbours.has(l.target)),
+  }
 
   const color = (d) => {
-    if (d.id === curPage || (d.id === '/' && curPage === '')) {
-      return 'var(--g-node-active)';
+    if (d.id === curPage || (d.id === "/" && curPage === "")) {
+      return "var(--g-node-active)"
     }
 
     for (const pathColor of pathColors) {
-      const path = Object.keys(pathColor)[0];
-      const colour = pathColor[path];
+      const path = Object.keys(pathColor)[0]
+      const colour = pathColor[path]
       if (d.id.startsWith(path)) {
-        return colour;
+        return colour
       }
     }
 
-    return 'var(--g-node)';
-  };
+    return "var(--g-node)"
+  }
 
   const drag = (simulation) => {
     function dragstarted(event, d) {
-      if (!event.active) simulation.alphaTarget(1).restart();
-      d.fx = d.x;
-      d.fy = d.y;
+      if (!event.active) simulation.alphaTarget(1).restart()
+      d.fx = d.x
+      d.fy = d.y
     }
 
     function dragged(event, d) {
-      d.fx = event.x;
-      d.fy = event.y;
+      d.fx = event.x
+      d.fy = event.y
     }
 
     function dragended(event, d) {
-      if (!event.active) simulation.alphaTarget(0);
-      d.fx = null;
-      d.fy = null;
+      if (!event.active) simulation.alphaTarget(0)
+      d.fx = null
+      d.fy = null
     }
 
-    const noop = () => {};
+    const noop = () => {}
     return d3
       .drag()
-      .on('start', enableDrag ? dragstarted : noop)
-      .on('drag', enableDrag ? dragged : noop)
-      .on('end', enableDrag ? dragended : noop);
-  };
+      .on("start", enableDrag ? dragstarted : noop)
+      .on("drag", enableDrag ? dragged : noop)
+      .on("end", enableDrag ? dragended : noop)
+  }
 
-  const height = Math.max(container.offsetHeight, 250);
-  const width = container.offsetWidth;
+  const height = Math.max(container.offsetHeight, isHome ? 500 : 250)
+  const width = container.offsetWidth
 
   const simulation = d3
     .forceSimulation(data.nodes)
-    .force('charge', d3.forceManyBody().strength(-30))
+    .force("charge", d3.forceManyBody().strength(-100 * repelForce))
     .force(
-      'link',
+      "link",
       d3
         .forceLink(data.links)
         .id((d) => d.id)
-        .distance(40)
+        .distance(40),
     )
-    .force('center', d3.forceCenter());
+    .force("center", d3.forceCenter())
 
   const svg = d3
-    .select('#graph-container')
-    .append('svg')
-    .attr('width', width)
-    .attr('height', height)
-    .attr('viewBox', [-width / 2, -height / 2, width, height]);
+    .select("#graph-container")
+    .append("svg")
+    .attr("width", width)
+    .attr("height", height)
+    .attr('viewBox', [-width / 2 * 1 / scale, -height / 2 * 1 / scale, width * 1 / scale, height * 1 / scale])
 
   if (enableLegend) {
-    const legend = [
-      { Current: 'var(--g-node-active)' },
-      { Note: 'var(--g-node)' },
-      ...pathColors,
-    ];
+    const legend = [{ Current: "var(--g-node-active)" }, { Note: "var(--g-node)" }, ...pathColors]
     legend.forEach((legendEntry, i) => {
-      const key = Object.keys(legendEntry)[0];
-      const colour = legendEntry[key];
+      const key = Object.keys(legendEntry)[0]
+      const colour = legendEntry[key]
       svg
-        .append('circle')
-        .attr('cx', -width / 2 + 20)
-        .attr('cy', height / 2 - 30 * (i + 1))
-        .attr('r', 6)
-        .style('fill', colour);
+        .append("circle")
+        .attr("cx", -width / 2 + 20)
+        .attr("cy", height / 2 - 30 * (i + 1))
+        .attr("r", 6)
+        .style("fill", colour)
       svg
-        .append('text')
-        .attr('x', -width / 2 + 40)
-        .attr('y', height / 2 - 30 * (i + 1))
+        .append("text")
+        .attr("x", -width / 2 + 40)
+        .attr("y", height / 2 - 30 * (i + 1))
         .text(key)
-        .style('font-size', '15px')
-        .attr('alignment-baseline', 'middle');
-    });
+        .style("font-size", "15px")
+        .attr("alignment-baseline", "middle")
+    })
   }
 
   // draw links between nodes
   const link = svg
-    .append('g')
-    .selectAll('line')
+    .append("g")
+    .selectAll("line")
     .data(data.links)
-    .join('line')
-    .attr('class', 'link')
-    .attr('stroke', 'var(--g-link)')
-    .attr('stroke-width', 2)
-    .attr('data-source', (d) => d.source.id)
-    .attr('data-target', (d) => d.target.id);
+    .join("line")
+    .attr("class", "link")
+    .attr("stroke", "var(--g-link)")
+    .attr("stroke-width", 2)
+    .attr("data-source", (d) => d.source.id)
+    .attr("data-target", (d) => d.target.id)
 
   // svg groups
-  const graphNode = svg
-    .append('g')
-    .selectAll('g')
-    .data(data.nodes)
-    .enter()
-    .append('g');
+  const graphNode = svg.append("g").selectAll("g").data(data.nodes).enter().append("g")
 
   // calculate radius
   const nodeRadius = (d) => {
-    const numOut = index.links[d.id]?.length || 0;
-    const numIn = index.backlinks[d.id]?.length || 0;
-    return 3 + (numOut + numIn) / 4;
-  };
+    const numOut = index.links[d.id]?.length || 0
+    const numIn = index.backlinks[d.id]?.length || 0
+    return 2 + Math.sqrt(numOut + numIn)
+  }
 
   // draw individual nodes
   const node = graphNode
-    .append('circle')
-    .attr('class', 'node')
-    .attr('id', (d) => d.id)
-    .attr('r', nodeRadius)
-    .attr('fill', color)
-    .style('cursor', 'pointer')
-    .on('click', (_, d) => {
+    .append("circle")
+    .attr("class", "node")
+    .attr("id", (d) => d.id)
+    .attr("r", nodeRadius)
+    .attr("fill", color)
+    .style("cursor", "pointer")
+    .on("click", (_, d) => {
       // SPA navigation
-      window.navigate(
-        new URL(`${baseUrl}${decodeURI(d.id).replace(/\s+/g, '-')}/`),
-        '.singlePage'
-      );
+      window.Million.navigate(new URL(`${baseUrl}${decodeURI(d.id).replace(/\s+/g, "-")}/`), ".singlePage")
     })
-    .on('mouseover', function (_, d) {
-      d3.selectAll('.node')
-        .transition()
-        .duration(100)
-        .attr('fill', 'var(--g-node-inactive)');
+    .on("mouseover", function (_, d) {
+      d3.selectAll(".node").transition().duration(100).attr("fill", "var(--g-node-inactive)")
 
       const neighbours = parseIdsFromLinks([
         ...(index.links[d.id] || []),
         ...(index.backlinks[d.id] || []),
-      ]);
-      const neighbourNodes = d3
-        .selectAll('.node')
-        .filter((d) => neighbours.includes(d.id));
-      const currentId = d.id;
+      ])
+      const neighbourNodes = d3.selectAll(".node").filter((d) => neighbours.includes(d.id))
+      const currentId = d.id
+      window.Million.prefetch(new URL(`${baseUrl}${decodeURI(d.id).replace(/\s+/g, "-")}/`))
       const linkNodes = d3
-        .selectAll('.link')
-        .filter((d) => d.source.id === currentId || d.target.id === currentId);
+        .selectAll(".link")
+        .filter((d) => d.source.id === currentId || d.target.id === currentId)
 
       // highlight neighbour nodes
-      neighbourNodes.transition().duration(200).attr('fill', color);
+      neighbourNodes.transition().duration(200).attr("fill", color)
 
       // highlight links
-      linkNodes
-        .transition()
-        .duration(200)
-        .attr('stroke', 'var(--g-link-active)');
+      linkNodes.transition().duration(200).attr("stroke", "var(--g-link-active)")
+
+      const bigFont = fontSize*1.5
 
       // show text for self
       d3.select(this.parentNode)
         .raise()
-        .select('text')
+        .select("text")
         .transition()
         .duration(200)
-        .style('opacity', 1);
+        .attr('opacityOld', d3.select(this.parentNode).select('text').style("opacity"))
+        .style('opacity', 1)
+        .style('font-size', bigFont+'em')
+        .attr('dy', d => nodeRadius(d) + 20 + 'px') // radius is in px
     })
-    .on('mouseleave', function (_, d) {
-      d3.selectAll('.node').transition().duration(200).attr('fill', color);
+    .on("mouseleave", function (_, d) {
+      d3.selectAll(".node").transition().duration(200).attr("fill", color)
 
-      const currentId = d.id;
+      const currentId = d.id
       const linkNodes = d3
-        .selectAll('.link')
-        .filter((d) => d.source.id === currentId || d.target.id === currentId);
+        .selectAll(".link")
+        .filter((d) => d.source.id === currentId || d.target.id === currentId)
 
-      linkNodes.transition().duration(200).attr('stroke', 'var(--g-link)');
+      linkNodes.transition().duration(200).attr("stroke", "var(--g-link)")
 
       d3.select(this.parentNode)
-        .select('text')
-        .transition()
-        .duration(200)
-        .style('opacity', 0);
+      .select("text")
+      .transition()
+      .duration(200)
+      .style('opacity', d3.select(this.parentNode).select('text').attr("opacityOld"))
+      .style('font-size', fontSize+'em')
+      .attr('dy', d => nodeRadius(d) + 8 + 'px') // radius is in px
     })
-    .call(drag(simulation));
+    .call(drag(simulation))
 
   // draw labels
   const labels = graphNode
-    .append('text')
-    .attr('dx', 0)
-    .attr('dy', (d) => nodeRadius(d) + 8 + 'px')
-    .attr('text-anchor', 'middle')
-    .text((d) => content[d.id]?.title || d.id.replace('-', ' '))
-    .style('opacity', 0)
-    .style('pointer-events', 'none')
-    .style('font-size', '0.4em')
+    .append("text")
+    .attr("dx", 0)
+    .attr("dy", (d) => nodeRadius(d) + 8 + "px")
+    .attr("text-anchor", "middle")
+    .text((d) => content[d.id]?.title || d.id.replace("-", " "))
+    .style('opacity', (opacityScale - 1) / 3.75)
+    .style("pointer-events", "none")
+    .style('font-size', fontSize+'em')
     .raise()
-    .call(drag(simulation));
+    .call(drag(simulation))
 
   // set panning
 
@@ -258,24 +247,24 @@
           [width, height],
         ])
         .scaleExtent([0.25, 4])
-        .on('zoom', ({ transform }) => {
-          link.attr('transform', transform);
-          node.attr('transform', transform);
-          const scale = transform.k;
-          const scaledOpacity = Math.max((scale - 1) / 3.75, 0);
-          labels.attr('transform', transform).style('opacity', scaledOpacity);
-        })
-    );
+        .on("zoom", ({ transform }) => {
+          link.attr("transform", transform)
+          node.attr("transform", transform)
+          const scale = transform.k * opacityScale;
+          const scaledOpacity = Math.max((scale - 1) / 3.75, 0)
+          labels.attr("transform", transform).style("opacity", scaledOpacity)
+        }),
+    )
   }
 
   // progress the simulation
-  simulation.on('tick', () => {
+  simulation.on("tick", () => {
     link
-      .attr('x1', (d) => d.source.x)
-      .attr('y1', (d) => d.source.y)
-      .attr('x2', (d) => d.target.x)
-      .attr('y2', (d) => d.target.y);
-    node.attr('cx', (d) => d.x).attr('cy', (d) => d.y);
-    labels.attr('x', (d) => d.x).attr('y', (d) => d.y);
-  });
+      .attr("x1", (d) => d.source.x)
+      .attr("y1", (d) => d.source.y)
+      .attr("x2", (d) => d.target.x)
+      .attr("y2", (d) => d.target.y)
+    node.attr("cx", (d) => d.x).attr("cy", (d) => d.y)
+    labels.attr("x", (d) => d.x).attr("y", (d) => d.y)
+  })
 }

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